STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIQ13894.1Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (260 aa)    
Predicted Functional Partners:
AIQ13896.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.936
AIQ13893.1
Sporulation protein, YlmC/YmxH family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.921
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
  
 0.863
AIQ13654.1
Chemotaxis protein CheY; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.825
AIQ14843.1
Stage III sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.818
AIQ13518.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
  
 0.815
AIQ13895.1
Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
0.809
AIQ10634.1
Stage V sporulation protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.804
AIQ10643.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.802
AIQ14865.1
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.795
Your Current Organism:
Paenibacillus durus
NCBI taxonomy Id: 44251
Other names: ATCC 27763, ATCC 35681 [[Paenibacillus azotofixans]], Bacillus azotifixans, Bacillus azotofixans, CIP 104586 [[Paenibacillus azotofixans]], Clostridium durum, DSM 5976 [[Paenibacillus azotofixans]], LMG 14658 [[Paenibacillus azotofixans]], LMG:14658 [[Paenibacillus azotofixans]], P. durus, Paenibacillus azotofixans, Paenibacillus durum, VPI 6563, bacterium ISSDS-862, strain P3L-5 [[Paenibacillus azotofixans]]
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