STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbhA-2Exoglucanase A; Belongs to the glycosyl hydrolase family 6. (716 aa)    
Predicted Functional Partners:
DJ90_170
Cellulase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 0.871
DJ90_5159
Chitinase A domain protein; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.860
pelA
Pectate lyase A.
  
  0.850
DJ90_21
Glycosyl hydrolase 9 family protein.
 
  
  0.777
DJ90_3037
Fibronectin type III domain protein.
  
 
  0.773
xynA-2
Endo-1,4-beta-xylanase A; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
  
  0.772
DJ90_5767
Putative cellulosome protein dockerin type I.
  
  
 0.765
DJ90_4083
F5/8 type C domain protein.
  
  0.764
DJ90_4746
Right handed beta helix region family protein.
  
  
 0.748
celI
Endoglucanase 1.
 
 
0.744
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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