STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_16HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein. (219 aa)    
Predicted Functional Partners:
DJ90_17
Bacterial extracellular solute-binding s, 3 family protein.
 0.999
artP
Amino acid ABC transporter.
 0.993
DJ90_4936
Bacterial extracellular solute-binding s, 3 family protein.
 0.987
DJ90_1140
Putative amino-acid import ATP-binding protein YxeO.
 0.963
DJ90_329
ABC transporter family protein.
 0.962
DJ90_4934
ABC transporter family protein.
 0.961
DJ90_3973
ABC transporter family protein.
 0.959
DJ90_1138
Putative amino-acid-binding protein yxeM; Belongs to the bacterial solute-binding protein 3 family.
 0.930
DJ90_328
Bacterial extracellular solute-binding s, 3 family protein.
 0.904
DJ90_3974
Putative amino-acid transporter periplasmic solute-binding protein.
 
 0.885
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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