STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_197Aman2_put: alpha-1,2-mannosidase family protein. (1795 aa)    
Predicted Functional Partners:
DJ90_1604
Hypothetical protein.
  
     0.704
DJ90_5069
Glycosyl hydrolases 43 family protein.
  
     0.704
DJ90_199
Fibronectin type III domain protein.
 
    
0.647
DJ90_3699
Hypothetical protein.
 
   
 0.626
DJ90_4060
Glycosyl hydrolase family 20, catalytic domain protein.
 
   
 0.595
recF
DNA replication and repair RecF family protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
      
 0.556
DJ90_198
Hypothetical protein.
     
 0.550
manA
manA: mannose-6-phosphate isomerase, class I; Belongs to the mannose-6-phosphate isomerase type 1 family.
 
   
 0.529
DJ90_1024
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
  
     0.503
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
      
 0.503
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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