STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_1985Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein. (401 aa)    
Predicted Functional Partners:
rpmG
rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.821
rpsN2
Alternate 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.548
troA
Periplasmic zinc-binding protein troA; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.463
folE2
GTP cyclohydrolase folE2; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.455
DJ90_1987
ABC transporter family protein.
       0.452
DJ90_1988
ABC transporter family protein.
       0.452
DJ90_1989
Binding--dependent transport system inner membrane component family protein.
       0.452
DJ90_1990
Binding--dependent transport system inner membrane component family protein.
       0.452
DJ90_722
bacill_yteA: regulatory, yteA family protein.
  
  
 0.449
DJ90_1844
Putative zinc transport system zinc-binding lipoprotein AdcA; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.444
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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