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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_1998Transposon-encoded TnpV family protein. (123 aa)    
Predicted Functional Partners:
DJ90_1999
Methyltransferase domain protein.
 
     0.775
DJ90_2005
Hypothetical protein.
  
     0.757
DJ90_1676
Sigma-70, region 4 family protein.
  
    0.752
DJ90_1633
Sigma-70, region 4 family protein.
  
    0.749
DJ90_1699
Hypothetical protein.
  
     0.746
DJ90_2008
Hypothetical protein.
  
     0.726
DJ90_2033
Peptidase C39 like family protein.
  
    0.725
DJ90_2013
Type IV secretory system Conjugative DNA transfer family protein.
 
     0.701
DJ90_1995
parB-like nuclease domain protein.
  
     0.674
DJ90_6557
ABC-2 transporter family protein.
  
     0.664
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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