Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DJ90_2143 | lepB | DJ90_2143 | DJ90_2141 | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family. | 0.568 |
DJ90_2143 | leuC | DJ90_2143 | DJ90_2134 | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.517 |
DJ90_2143 | leuD | DJ90_2143 | DJ90_2133 | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.519 |
lepB | DJ90_2143 | DJ90_2141 | DJ90_2143 | sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family. | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | 0.568 |
leuC | DJ90_2143 | DJ90_2134 | DJ90_2143 | 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | 0.517 |
leuC | leuD | DJ90_2134 | DJ90_2133 | 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.999 |
leuD | DJ90_2143 | DJ90_2133 | DJ90_2143 | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. | 0.519 |
leuD | leuC | DJ90_2133 | DJ90_2134 | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.999 |