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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_218gtrA-like family protein. (205 aa)    
Predicted Functional Partners:
DJ90_217
Glycosyl transferase 2 family protein.
 
     0.927
bglB-2
Thermostable beta-glucosidase B; Belongs to the glycosyl hydrolase 3 family.
 
     0.871
DJ90_220
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
 
     0.863
bglB
Thermostable beta-glucosidase B; Belongs to the glycosyl hydrolase 3 family.
 
     0.693
DJ90_4184
Uroporphyrinogen decarboxylase family protein; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.632
glf
UDP-GALP_mutase: UDP-galactopyranose mutase.
 
     0.558
DJ90_5762
2A0309: spore germination family protein.
  
     0.500
DJ90_4181
Glyoxalase-like domain protein.
  
     0.496
DJ90_221
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
 
     0.473
DJ90_382
Hypothetical protein.
  
     0.410
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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