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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_246Helix-turn-helix domain protein. (820 aa)    
Predicted Functional Partners:
xylA-3
Beta-xylosidase.
    
  0.754
DJ90_3683
Right handed beta helix region family protein.
  
     0.753
DJ90_5479
Phosphatase regulatory subunit.
  
     0.727
DJ90_4425
Putative lipoprotein.
  
     0.708
DJ90_4837
Sensor family protein.
  
     0.698
DJ90_4461
Cupin domain protein.
  
  
  0.691
DJ90_3668
Right handed beta helix region family protein.
  
     0.690
DJ90_3674
Glycosyl transferase 4-like domain protein.
  
    0.680
DJ90_5260
Methyltransferase domain protein.
 
     0.670
DJ90_3615
HEAT repeat family protein.
  
     0.663
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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