Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DJ90_2042 | DJ90_3327 | DJ90_2042 | DJ90_3327 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | HRDC domain protein. | 0.815 |
DJ90_2042 | lexA | DJ90_2042 | DJ90_4998 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response). | 0.459 |
DJ90_2042 | pcrA | DJ90_2042 | DJ90_3935 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | pcrA: ATP-dependent DNA helicase PcrA. | 0.789 |
DJ90_2042 | polA | DJ90_2042 | DJ90_4373 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.682 |
DJ90_2042 | recA | DJ90_2042 | DJ90_2608 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.896 |
DJ90_2042 | recQ | DJ90_2042 | DJ90_3384 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | recQ: ATP-dependent DNA helicase RecQ. | 0.815 |
DJ90_2042 | rpoB | DJ90_2042 | DJ90_5577 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.739 |
DJ90_2042 | ypcP | DJ90_2042 | DJ90_3331 | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | 5'-3' exonuclease. | 0.738 |
DJ90_3108 | recA | DJ90_3108 | DJ90_2608 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.894 |
DJ90_3327 | DJ90_2042 | DJ90_3327 | DJ90_2042 | HRDC domain protein. | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | 0.815 |
DJ90_3327 | pcrA | DJ90_3327 | DJ90_3935 | HRDC domain protein. | pcrA: ATP-dependent DNA helicase PcrA. | 0.815 |
DJ90_3327 | polA | DJ90_3327 | DJ90_4373 | HRDC domain protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.924 |
DJ90_3327 | recA | DJ90_3327 | DJ90_2608 | HRDC domain protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.903 |
DJ90_3327 | rpoB | DJ90_3327 | DJ90_5577 | HRDC domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.410 |
DJ90_3327 | ypcP | DJ90_3327 | DJ90_3331 | HRDC domain protein. | 5'-3' exonuclease. | 0.895 |
lexA | DJ90_2042 | DJ90_4998 | DJ90_2042 | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response). | Hypothetical protein; uvrD/REP helicase N-terminal domain protein. | 0.459 |
lexA | pcrA | DJ90_4998 | DJ90_3935 | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response). | pcrA: ATP-dependent DNA helicase PcrA. | 0.565 |
lexA | polA | DJ90_4998 | DJ90_4373 | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.428 |
lexA | recA | DJ90_4998 | DJ90_2608 | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response). | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.984 |
lexA | recX | DJ90_4998 | DJ90_2609 | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response). | recX family protein; Modulates RecA activity; Belongs to the RecX family. | 0.442 |
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