STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_33sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein. (181 aa)    
Predicted Functional Partners:
DJ90_32
Hypothetical protein.
   
   0.880
DJ90_2876
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.773
DJ90_1767
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.772
DJ90_5316
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.771
DJ90_3247
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.769
DJ90_2672
sigM_subfam: RNA polymerase sigma factor, SigM family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.767
DJ90_5930
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.760
DJ90_4911
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.758
DJ90_3471
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.712
DJ90_2741
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
     0.686
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.