DJ90_413 protein (Paenibacillus macerans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DJ90_413

Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. (210 aa)

Predicted Functional Partners:

nrdD-2

0.932

nrdD

0.924

queD

0.821

DJ90_416

0.792

DJ90_414

0.773

DJ90_415

0.770

queF

0.730

pflB

0.726

DJ90_417

0.717

queC

0.696

Your Current Organism:

Paenibacillus macerans

NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DJ90_413	DJ90_414	DJ90_413	DJ90_414	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Hypothetical protein.	0.773
DJ90_413	DJ90_415	DJ90_413	DJ90_415	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Hypothetical protein.	0.770
DJ90_413	DJ90_416	DJ90_413	DJ90_416	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	ATPase associated with various cellular activities family protein.	0.792
DJ90_413	DJ90_417	DJ90_413	DJ90_417	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Hypothetical protein.	0.717
DJ90_413	nrdD	DJ90_413	DJ90_1068	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	nrdD: anaerobic ribonucleoside-triphosphate reductase.	0.924
DJ90_413	nrdD-2	DJ90_413	DJ90_4622	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	nrdD: anaerobic ribonucleoside-triphosphate reductase.	0.932
DJ90_413	pflB	DJ90_413	DJ90_3642	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Pyr_form_ly_1: formate acetyltransferase.	0.726
DJ90_413	queC	DJ90_413	DJ90_3430	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	Queuosine biosynthesis protein QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)).	0.696
DJ90_413	queD	DJ90_413	DJ90_3431	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	queuosine_QueD: queuosine biosynthesis protein QueD.	0.821
DJ90_413	queF	DJ90_413	DJ90_3433	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.	0.730
DJ90_414	DJ90_413	DJ90_414	DJ90_413	Hypothetical protein.	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.773
DJ90_414	DJ90_415	DJ90_414	DJ90_415	Hypothetical protein.	Hypothetical protein.	0.757
DJ90_414	DJ90_416	DJ90_414	DJ90_416	Hypothetical protein.	ATPase associated with various cellular activities family protein.	0.733
DJ90_414	DJ90_417	DJ90_414	DJ90_417	Hypothetical protein.	Hypothetical protein.	0.679
DJ90_415	DJ90_413	DJ90_415	DJ90_413	Hypothetical protein.	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.770
DJ90_415	DJ90_414	DJ90_415	DJ90_414	Hypothetical protein.	Hypothetical protein.	0.757
DJ90_415	DJ90_416	DJ90_415	DJ90_416	Hypothetical protein.	ATPase associated with various cellular activities family protein.	0.747
DJ90_415	DJ90_417	DJ90_415	DJ90_417	Hypothetical protein.	Hypothetical protein.	0.710
DJ90_416	DJ90_413	DJ90_416	DJ90_413	ATPase associated with various cellular activities family protein.	Radical SAM superfamily protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.	0.792
DJ90_416	DJ90_414	DJ90_416	DJ90_414	ATPase associated with various cellular activities family protein.	Hypothetical protein.	0.733

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About