STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_4338Bacterial regulatory, Fis family protein. (648 aa)    
Predicted Functional Partners:
rpoN-2
rpoN_sigma: RNA polymerase sigma-54 factor.
 
  
 0.938
rpoN
rpoN_sigma: RNA polymerase sigma-54 factor.
 
  
 0.823
dhaK
dhaK1: dihydroxyacetone kinase, DhaK subunit.
    
 
 0.723
dhaK-2
dhaK1: dihydroxyacetone kinase, DhaK subunit.
    
 
 0.723
DJ90_71
Dak1 domain protein.
    
 
 0.723
dhaL
dha_L_ycgS: dihydroxyacetone kinase, L subunit.
    
 
 0.723
lpdA-2
lipoamide_DH: dihydrolipoyl dehydrogenase.
 
   
 0.593
DJ90_4341
2-oxoacid dehydrogenases acyltransferase family protein.
 
   
 0.580
DJ90_4337
Hypothetical protein.
       0.578
DJ90_4343
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
 
   
 0.538
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.