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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (496 aa)    
Predicted Functional Partners:
araD
araD: L-ribulose-5-phosphate 4-epimerase.
 
 
 0.994
araB
L-ribulokinase: L-ribulokinase.
 
 
 0.992
araB-2
L-ribulokinase: L-ribulokinase.
 
 
 0.982
abjA
alpha-L-arabinofuranosidase.
 
 
 0.955
abfA
alpha-N-arabinofuranosidase.
 
 
 0.950
DJ90_2316
alpha-L-arabinofuranosidase family protein.
 
 
 0.903
xylA-3
Beta-xylosidase.
  
  
  0.875
xylA-2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
    
 0.863
araR
Arabinose metabolism transcriptional repressor.
 
   
 0.849
DJ90_431
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
 
 
 0.840
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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