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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araRArabinose metabolism transcriptional repressor. (365 aa)    
Predicted Functional Partners:
araD
araD: L-ribulose-5-phosphate 4-epimerase.
 
     0.885
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.849
gltB
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.674
DJ90_1133
Bacterial regulatory s, lacI family protein.
  
     0.628
araB
L-ribulokinase: L-ribulokinase.
 
     0.586
xylB
xylB: xylulokinase.
  
 
   0.560
DJ90_5059
Periplasmic binding s and sugar binding domain of LacI family protein.
  
     0.554
DJ90_5096
Bacterial regulatory s, lacI family protein.
  
     0.529
egsA
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
 
     0.496
DJ90_454
Bacterial extracellular solute-binding family protein.
  
     0.488
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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