Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araDaraD: L-ribulose-5-phosphate 4-epimerase. (229 aa)    
Predicted Functional Partners:
araB
L-ribulokinase: L-ribulokinase.
 
 
 0.995
araB-2
L-ribulokinase: L-ribulokinase.
 
 
 0.992
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.969
citE
citE: citrate (pro-3S)-lyase, beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.960
xylB
xylB: xylulokinase.
 
 
 0.956
DJ90_230
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein.
  
 
 0.940
rpe-3
Rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 
 0.917
DJ90_3692
Xylose isomerase-like TIM barrel family protein.
     
  0.900
araR
Arabinose metabolism transcriptional repressor.
 
     0.859
egsA
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
  
  
 0.813
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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