STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araBL-ribulokinase: L-ribulokinase. (556 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.992
araD
araD: L-ribulose-5-phosphate 4-epimerase.
 
 
 0.987
egsA
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
 
    0.871
egsA-2
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
 
    0.790
rpiB
rpiB: ribose 5-phosphate isomerase B.
    
  0.739
rpe-3
Rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.736
DJ90_1905
Xylose isomerase-like TIM barrel family protein.
    
  0.735
DJ90_1955
pfkB carbohydrate kinase family protein.
     
 0.730
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; rhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.707
DJ90_431
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
 
 
 0.634
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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