STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_4465Putative hTH-type transcriptional regulator yvaV; Belongs to the GbsR family. (183 aa)    
Predicted Functional Partners:
proV
proV: glycine betaine/L-proline transport ATP binding subunit.
 
     0.708
opuAC
Glycine betaine-binding protein.
 
   
 0.618
DJ90_6347
Flagellar biosynthesis, FliO family protein.
  
     0.522
DJ90_4947
Transcriptional regulator, ArsR family.
  
     0.499
mreD
shape_MreD: rod shape-determining protein MreD.
  
     0.487
DJ90_2690
Hypothetical protein.
  
     0.477
DJ90_4467
Binding--dependent transport system inner membrane component family protein.
     
 0.467
DJ90_254
Hypothetical protein.
  
     0.462
DJ90_6572
Flagellar hook-length control FliK family protein.
  
     0.447
DJ90_4293
Hypothetical protein.
  
     0.430
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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