STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_52Bacterial regulatory s, tetR family protein. (198 aa)    
Predicted Functional Partners:
DJ90_51
RND_mfp: efflux transporter, RND family, MFP subunit.
       0.676
DJ90_50
ABC-2 type transporter family protein.
       0.662
DJ90_5213
Hypothetical protein; pip_yhgE_Nterm: YhgE/Pip N-terminal domain protein.
 
    0.530
DJ90_5216
Secretion target family protein; WXG100 type VII; WXG100_ESAT6: WXG100 type VII secretion target family protein; Belongs to the WXG100 family.
  
     0.495
DJ90_1643
Bacterial regulatory s, tetR family protein.
  
     0.432
DJ90_6409
Rubrerythrin family protein.
  
     0.429
DJ90_4337
Hypothetical protein.
  
     0.420
spo0M
Sporulation-control protein spo0M.
  
     0.402
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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