STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_541Response regulator. (354 aa)    
Predicted Functional Partners:
DJ90_542
Helix-turn-helix domain protein.
     0.855
DJ90_543
Bacterial extracellular solute-binding family protein.
 
     0.712
DJ90_3617
Response regulator.
  
     0.711
DJ90_4763
HAMP domain protein.
  
     0.617
DJ90_545
Binding--dependent transport system inner membrane component family protein.
 
     0.542
DJ90_48
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
  
     0.533
DJ90_544
Binding--dependent transport system inner membrane component family protein.
 
     0.532
DJ90_3706
HAMP domain protein.
  
     0.528
DJ90_3359
Sensory box protein.
  
     0.502
DJ90_3739
Hypothetical protein.
  
     0.501
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.