STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yyaC-2spore_YyaC: putative sporulation protein YyaC. (190 aa)    
Predicted Functional Partners:
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.797
DJ90_5467
Hypothetical protein.
 
     0.767
spoIIIAD
spore_III_AD: stage III sporulation protein AD.
  
     0.759
spoVT
Stage V sporulation protein T.
  
  
 0.754
spoIIIAB
spore_III_AB: stage III sporulation protein AB.
  
     0.745
spoIIIAE
spore_III_AE: stage III sporulation protein AE.
  
     0.739
DJ90_6062
Putative membrane protein.
  
    0.729
DJ90_3319
ytxC-like family protein.
  
     0.720
ylbJ
spore_ylbJ: sporulation integral membrane protein YlbJ.
  
    0.720
DJ90_5468
Mechanosensitive ion channel family protein.
       0.705
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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