STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_554Putative membrane protein. (413 aa)    
Predicted Functional Partners:
DJ90_3319
ytxC-like family protein.
  
     0.671
spoIIIAB
spore_III_AB: stage III sporulation protein AB.
  
    0.587
DJ90_553
Cupin domain protein.
       0.564
spoIIM
spo_II_M: stage II sporulation protein M.
  
    0.557
spoIIIAE
spore_III_AE: stage III sporulation protein AE.
  
    0.528
lonB
spore_lonB: ATP-dependent protease LonB.
  
     0.514
yqfC
spore_yqfC: sporulation protein YqfC.
  
     0.494
DJ90_555
Helix-turn-helix domain protein.
       0.487
yyaC-2
spore_YyaC: putative sporulation protein YyaC.
 
    0.483
yabQ
spore_yabQ: spore cortex biosynthesis protein YabQ.
  
     0.454
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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