STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DJ90_5940ABC-2 transporter family protein. (558 aa)    
Predicted Functional Partners:
DJ90_5939
ABC transporter family protein.
 
     0.965
DJ90_5941
Nitrous oxide-stimulated promoter family protein.
       0.856
DJ90_5938
Putative membrane protein.
       0.570
splB
photo_TT_lyase: spore photoproduct lyase.
  
     0.525
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
       0.485
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
       0.469
cydC-2
cydC: thiol reductant ABC exporter, CydC subunit.
       0.469
DJ90_124
Hypothetical protein.
  
     0.457
DJ90_376
Prenyltransferase-like family protein.
  
     0.447
DJ90_5942
Bacterial Cytochrome Ubiquinol Oxidase family protein.
       0.443
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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