Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DJ90_1343 | DJ90_1650 | Hypothetical protein. | spore_ger_x_C: germination, Ger(x)C family protein. | 0.458 |
DJ90_1343 | DJ90_4721 | Hypothetical protein. | Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella family protein. | 0.444 |
DJ90_1343 | DJ90_5375 | Hypothetical protein. | TM2 domain protein. | 0.458 |
DJ90_1343 | DJ90_5730 | Hypothetical protein. | Hypothetical protein. | 0.617 |
DJ90_1343 | DJ90_6411 | Hypothetical protein. | Putative dNA polymerase beta domain protein region. | 0.436 |
DJ90_1649 | DJ90_1650 | 2A0309: spore germination family protein. | spore_ger_x_C: germination, Ger(x)C family protein. | 0.966 |
DJ90_1649 | DJ90_4718 | 2A0309: spore germination family protein. | Helix-turn-helix domain protein. | 0.555 |
DJ90_1649 | DJ90_4721 | 2A0309: spore germination family protein. | Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella family protein. | 0.648 |
DJ90_1649 | DJ90_5375 | 2A0309: spore germination family protein. | TM2 domain protein. | 0.523 |
DJ90_1649 | DJ90_5730 | 2A0309: spore germination family protein. | Hypothetical protein. | 0.598 |
DJ90_1649 | DJ90_6411 | 2A0309: spore germination family protein. | Putative dNA polymerase beta domain protein region. | 0.432 |
DJ90_1650 | DJ90_1343 | spore_ger_x_C: germination, Ger(x)C family protein. | Hypothetical protein. | 0.458 |
DJ90_1650 | DJ90_1649 | spore_ger_x_C: germination, Ger(x)C family protein. | 2A0309: spore germination family protein. | 0.966 |
DJ90_1650 | DJ90_4718 | spore_ger_x_C: germination, Ger(x)C family protein. | Helix-turn-helix domain protein. | 0.526 |
DJ90_1650 | DJ90_4721 | spore_ger_x_C: germination, Ger(x)C family protein. | Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella family protein. | 0.640 |
DJ90_1650 | DJ90_5375 | spore_ger_x_C: germination, Ger(x)C family protein. | TM2 domain protein. | 0.572 |
DJ90_1650 | DJ90_5730 | spore_ger_x_C: germination, Ger(x)C family protein. | Hypothetical protein. | 0.698 |
DJ90_1650 | DJ90_6411 | spore_ger_x_C: germination, Ger(x)C family protein. | Putative dNA polymerase beta domain protein region. | 0.532 |
DJ90_2630 | DJ90_6411 | Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein. | Putative dNA polymerase beta domain protein region. | 0.518 |
DJ90_2645 | DJ90_6411 | Hypothetical protein. | Putative dNA polymerase beta domain protein region. | 0.574 |
page 1 of 4