STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD78384.1Gfa-like protein. (241 aa)    
Predicted Functional Partners:
EYD78385.1
Hypothetical protein; FIG00992715.
       0.803
EYD77140.1
Protein of unknown function family; DUF636.
  
     0.656
EYD75731.1
Hypothetical protein.
  
     0.626
EYD78383.1
Ribosomal large subunit pseudouridine synthase A; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.578
EYD73513.1
Sarcosine dehydrogenase; Belongs to the GcvT family.
  
  
  0.516
EYD76068.1
Sarcosine dehydrogenase; Belongs to the GcvT family.
  
  
  0.492
EYD75164.1
Sarcosine dehydrogenase; Belongs to the GcvT family.
  
  
  0.483
EYD75165.1
Sarcosine dehydrogenase; Belongs to the GcvT family.
  
  
  0.478
EYD78386.1
Hypothetical protein; FIG00987702.
       0.433
EYD77645.1
Hypothetical protein.
  
     0.411
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.