STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD78238.1Unknown pentose utilization regulator, DeoR family. (260 aa)    
Predicted Functional Partners:
EYD72107.1
Tagatose-6-phosphate kinase / 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.814
EYD76163.1
Transcriptional regulator, DeoR family; Overlaps another CDS with the same product name.
  
     0.770
EYD78235.1
Hypothetical protein.
 
     0.649
EYD78236.1
Ribose ABC transport system, ATP-binding protein RbsA; TC 3.A.1.2.1.
       0.594
EYD78237.1
Ribose ABC transport system, permease protein RbsC; TC 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
       0.594
EYD77526.1
Ribose 5-phosphate isomerase B.
  
 
 0.575
EYD78239.1
Monooxygenase, FAD-binding protein.
       0.566
EYD78232.1
Unknown pentose isomerase; TM0951; overlaps another CDS with the same product name.
 
   
 0.536
EYD78231.1
Unknown pentose isomerase; TM0951; overlaps another CDS with the same product name.
 
   
 0.523
EYD75161.1
Acetyl-CoA synthetase; ADP-forming; alpha and beta chains, putative.
    
   0.502
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.