STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD78212.1Putative transcriptional regulator protein, AraC family. (134 aa)    
Predicted Functional Partners:
EYD78213.1
Melibiose operon regulatory protein.
     0.917
EYD78211.1
ABC transporter sugar binding protein.
 
     0.857
EYD76365.1
Glutamate synthase [NADPH] large chain.
    
  0.724
EYD76366.1
Glutamate synthase [NADPH] large chain.
    
  0.724
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.685
EYD76469.1
Hypothetical protein.
  
     0.668
EYD78210.1
Inositol transport system permease protein.
 
     0.614
EYD78209.1
ABC transporter sugar permease.
 
     0.587
EYD75222.1
Putative transcriptional regulator protein.
  
   0.568
EYD78207.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.538
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.