STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD78102.1Serine--glyoxylate aminotransferase. (396 aa)    
Predicted Functional Partners:
EYD78103.1
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.941
EYD74621.1
Phosphoserine phosphatase.
   
 0.786
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.777
EYD77572.1
Low-specificity L-threonine aldolase.
    
 0.774
EYD77882.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein); Overlaps another CDS with the same product name.
  
 
 0.768
EYD77881.1
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein); Overlaps another CDS with the same product name.
  
 
 0.759
EYD72117.1
D-3-phosphoglycerate dehydrogenase.
  
 
 0.757
EYD74556.1
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
     
 0.752
EYD77884.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase.
   
 
  0.747
EYD77313.1
Glycolate dehydrogenase, iron-sulfur subunit GlcF.
    
  0.747
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.