node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EYD77960.1 | EYD77961.1 | Rumeso_00421 | Rumeso_00422 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | 0.995 |
EYD77960.1 | ftsY | Rumeso_00421 | Rumeso_00826 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | Signal recognition particle receptor protein FtsY, alpha subunit; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components. | 0.994 |
EYD77960.1 | rplC | Rumeso_00421 | Rumeso_01803 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.965 |
EYD77960.1 | rplE | Rumeso_00421 | Rumeso_01790 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L5p (L11e); This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.969 |
EYD77960.1 | rplM | Rumeso_00421 | Rumeso_04703 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.965 |
EYD77960.1 | rplO | Rumeso_00421 | Rumeso_01782 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L15p (L27Ae); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.973 |
EYD77960.1 | rplS | Rumeso_00421 | Rumeso_00412 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.970 |
EYD77960.1 | rpsE | Rumeso_00421 | Rumeso_01784 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.971 |
EYD77960.1 | rpsP | Rumeso_00421 | Rumeso_00417 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family. | 0.985 |
EYD77960.1 | secY | Rumeso_00421 | Rumeso_01781 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | Preprotein translocase secY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.969 |
EYD77961.1 | EYD77960.1 | Rumeso_00422 | Rumeso_00421 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | 0.995 |
EYD77961.1 | ftsY | Rumeso_00422 | Rumeso_00826 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | Signal recognition particle receptor protein FtsY, alpha subunit; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components. | 0.994 |
EYD77961.1 | rplC | Rumeso_00422 | Rumeso_01803 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.965 |
EYD77961.1 | rplE | Rumeso_00422 | Rumeso_01790 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L5p (L11e); This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.969 |
EYD77961.1 | rplM | Rumeso_00422 | Rumeso_04703 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.969 |
EYD77961.1 | rplO | Rumeso_00422 | Rumeso_01782 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L15p (L27Ae); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.973 |
EYD77961.1 | rplS | Rumeso_00422 | Rumeso_00412 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.971 |
EYD77961.1 | rpsE | Rumeso_00422 | Rumeso_01784 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.970 |
EYD77961.1 | rpsP | Rumeso_00422 | Rumeso_00417 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family. | 0.981 |
EYD77961.1 | secY | Rumeso_00422 | Rumeso_01781 | Signal recognition particle, subunit Ffh SRP54; TC 3.A.5.1.1. | Preprotein translocase secY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.969 |