STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD77861.1Putative ATPase with chaperone activity, associated with Flp pilus assembly. (443 aa)    
Predicted Functional Partners:
EYD77856.1
Flp pilus assembly protein TadB.
 
    0.932
EYD77857.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
    0.931
EYD77859.1
Flp pilus assembly protein TadD; Contains TPR repeat.
 
     0.923
EYD77860.1
Type IV prepilin peptidase TadV/CpaA.
 
     0.922
EYD77858.1
Flp pilus assembly protein TadD; Contains TPR repeat.
 
     0.895
EYD77852.1
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly.
 
    0.883
EYD76388.1
Anti-sigma B factor, putative.
   
  
 0.858
EYD77849.1
Flp pilus assembly protein RcpC/CpaB.
 
    0.849
EYD77847.1
Flp pilus assembly protein, pilin Flp.
 
    0.831
EYD76716.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
    0.806
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.