Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EYD74239.1 | EYD77547.1 | Rumeso_04296 | Rumeso_00713 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | Homospermidine synthase. | 0.575 |
EYD74239.1 | rpsD | Rumeso_04296 | Rumeso_00712 | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.918 |
EYD77132.1 | EYD77547.1 | Rumeso_01244 | Rumeso_00713 | Ornithine decarboxylase / Arginine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | Homospermidine synthase. | 0.601 |
EYD77547.1 | EYD74239.1 | Rumeso_00713 | Rumeso_04296 | Homospermidine synthase. | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | 0.575 |
EYD77547.1 | EYD77132.1 | Rumeso_00713 | Rumeso_01244 | Homospermidine synthase. | Ornithine decarboxylase / Arginine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.601 |
EYD77547.1 | rpsD | Rumeso_00713 | Rumeso_00712 | Homospermidine synthase. | SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.464 |
rpsD | EYD74239.1 | Rumeso_00712 | Rumeso_04296 | SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. | 0.918 |
rpsD | EYD77547.1 | Rumeso_00712 | Rumeso_00713 | SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Homospermidine synthase. | 0.464 |