STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD77599.1Hypothetical protein; FIG018229. (100 aa)    
Predicted Functional Partners:
EYD77600.1
Hypothetical protein; FIG00449860.
 
     0.779
EYD77596.1
Uncharacterized protein; COG1496; overlaps another CDS with the same product name; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.702
EYD77597.1
Uncharacterized protein; COG1565; overlaps another CDS with the same product name.
       0.702
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.702
atpF
ATP synthase B' chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.659
EYD76056.1
Hypothetical protein; Belongs to the UPF0262 family.
  
     0.657
EYD77166.1
Aerobic cobaltochelatase CobT subunit.
  
     0.622
EYD76795.1
Sensor histidine kinase in cluster with mercury reductase.
  
     0.615
EYD76796.1
Sensor histidine kinase in cluster with mercury reductase.
  
     0.598
atpF-2
H+-transporting two-sector ATPase, B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.557
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.