STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD77447.1(acyl-carrier-protein) S-malonyltransferase. (307 aa)    
Predicted Functional Partners:
EYD77449.1
Hypothetical protein.
 
     0.899
EYD77446.1
Protein serine/threonine phosphatase PrpC, regulation of stationary phase.
 
     0.853
EYD77448.1
Hypothetical protein.
       0.774
EYD77450.1
VgrG protein.
 
     0.771
EYD76437.1
Uncharacterized protein ImpA.
  
     0.743
EYD76436.1
Serine/Threonine protein kinase.
  
     0.739
EYD77451.1
IcmF-related protein; Overlaps another CDS with the same product name.
 
     0.716
EYD76442.1
Uncharacterized protein ImpF.
  
     0.715
EYD74770.1
Uncharacterized protein ImpI/VasC.
  
     0.708
EYD77440.1
Hypothetical protein; FIG00988824.
 
     0.701
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.