STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD77276.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
EYD76166.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.689
EYD77275.1
Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family.
       0.686
EYD78397.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.659
EYD75768.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.600
EYD76569.1
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.552
EYD77277.1
Trimethylamine methyltransferase MttB-like protein; Belongs to the trimethylamine methyltransferase family.
       0.503
EYD77278.1
L-alanine-DL-glutamate epimerase; And related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.493
EYD77279.1
Short-chain dehydrogenase/reductase SDR.
       0.481
EYD77280.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.481
EYD76158.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.441
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.