STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD77128.1Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein. (323 aa)    
Predicted Functional Partners:
EYD77129.1
Peptide/nickel/opine uptake family ABC transporter, permease protein.
 
  0.942
EYD77130.1
Oligopeptide transport system permease protein OppC; TC 3.A.1.5.1.
 
  0.935
EYD77251.1
Dipeptide transport system permease protein DppC; TC 3.A.1.5.2; overlaps another CDS with the same product name.
  
  0.601
EYD77252.1
Dipeptide transport system permease protein DppC; TC 3.A.1.5.2; overlaps another CDS with the same product name.
  
  0.572
EYD77253.1
Oligopeptide/dipeptide ABC transporter, permease protein.
  
  0.570
EYD77127.1
Oligopeptide transport ATP-binding protein OppF; TC 3.A.1.5.1; Belongs to the ABC transporter superfamily.
  
  0.541
EYD77478.1
Putative ABC transporter, permease.
   
  0.473
EYD76673.1
Binding protein-protein-dependent transport system inner membrane component.
   
  0.473
EYD76575.1
Peptide ABC transporter, permease protein.
   
  0.473
EYD76361.1
ABC transporter, permease protein.
   
  0.473
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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