STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD77027.1ABC transporter, periplasmic spermidine putrescine-binding protein PotD; TC 3.A.1.11.1. (380 aa)    
Predicted Functional Partners:
EYD77025.1
ABC transporter permease component.
 
 
  0.973
EYD77026.1
Putrescine transport system permease protein PotH; TC 3.A.1.11.2.
 
 
  0.973
EYD77024.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.910
EYD72911.1
Spermidine Putrescine ABC transporter permease component PotB; TC 3.A.1.11.1.
 
 
  0.805
EYD77028.1
Transcriptional regulator, LysR family.
 
     0.777
EYD72910.1
Spermidine Putrescine ABC transporter permease component potC; TC 3.A.1.11.1.
 
 
  0.772
EYD76220.1
Putative ABC transporter permease.
 
 
  0.718
EYD75571.1
Spermidine Putrescine ABC transporter permease component potC; TC_3.A.1.11.1.
 
 
  0.714
EYD76565.1
ABC spermidine/putrescine transporter, inner membrane subunit.
 
 
  0.711
EYD76564.1
Spermidine Putrescine ABC transporter permease component PotB; TC 3.A.1.11.1.
 
 
  0.704
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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