Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EYD75916.1 | EYD75917.1 | Rumeso_02534 | Rumeso_02535 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | 0.950 |
EYD75916.1 | EYD76624.1 | Rumeso_02534 | Rumeso_01582 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | Translation initiation inhibitor. | 0.434 |
EYD75917.1 | EYD75916.1 | Rumeso_02535 | Rumeso_02534 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | 0.950 |
EYD75917.1 | EYD76624.1 | Rumeso_02535 | Rumeso_01582 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | Translation initiation inhibitor. | 0.434 |
EYD76623.1 | EYD76624.1 | Rumeso_01581 | Rumeso_01582 | Hypothetical protein. | Translation initiation inhibitor. | 0.410 |
EYD76623.1 | EYD76625.1 | Rumeso_01581 | Rumeso_01583 | Hypothetical protein. | Hypothetical protein. | 0.409 |
EYD76624.1 | EYD75916.1 | Rumeso_01582 | Rumeso_02534 | Translation initiation inhibitor. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | 0.434 |
EYD76624.1 | EYD75917.1 | Rumeso_01582 | Rumeso_02535 | Translation initiation inhibitor. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name. | 0.434 |
EYD76624.1 | EYD76623.1 | Rumeso_01582 | Rumeso_01581 | Translation initiation inhibitor. | Hypothetical protein. | 0.410 |
EYD76624.1 | EYD76625.1 | Rumeso_01582 | Rumeso_01583 | Translation initiation inhibitor. | Hypothetical protein. | 0.773 |
EYD76624.1 | dadA | Rumeso_01582 | Rumeso_00605 | Translation initiation inhibitor. | D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. | 0.445 |
EYD76624.1 | rph | Rumeso_01582 | Rumeso_04203 | Translation initiation inhibitor. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.581 |
EYD76625.1 | EYD76623.1 | Rumeso_01583 | Rumeso_01581 | Hypothetical protein. | Hypothetical protein. | 0.409 |
EYD76625.1 | EYD76624.1 | Rumeso_01583 | Rumeso_01582 | Hypothetical protein. | Translation initiation inhibitor. | 0.773 |
dadA | EYD76624.1 | Rumeso_00605 | Rumeso_01582 | D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. | Translation initiation inhibitor. | 0.445 |
rph | EYD76624.1 | Rumeso_04203 | Rumeso_01582 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Translation initiation inhibitor. | 0.581 |