STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD76624.1Translation initiation inhibitor. (115 aa)    
Predicted Functional Partners:
EYD76625.1
Hypothetical protein.
       0.773
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
   0.581
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids.
 
    0.445
EYD75916.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name.
  
   0.434
EYD75917.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-uracil reductase; 5-phosphoribosylamino; overlaps another CDS with the same product name.
  
   0.434
EYD76623.1
Hypothetical protein.
  
    0.410
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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