Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EYD76415.1Ferredoxin. (109 aa)    
Predicted Functional Partners:
EYD76416.1
Succinate dehydrogenase flavoprotein subunit.
 
 
 0.973
EYD74877.1
Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit.
  
 0.934
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.925
EYD77592.1
Sulfate adenylyltransferase, dissimilatory-type; Overlaps another CDS with the same product name.
    
 0.843
EYD77593.1
Sulfate adenylyltransferase, dissimilatory-type; Overlaps another CDS with the same product name.
    
 0.843
EYD76365.1
Glutamate synthase [NADPH] large chain.
     
 0.842
EYD76366.1
Glutamate synthase [NADPH] large chain.
     
 0.842
EYD76990.1
Indolepyruvate oxidoreductase subunit IorB II.
  
 0.839
EYD76413.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
    0.791
EYD76414.1
ABC transporter, ATP-binding protein component.
 
     0.777
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.