STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD75407.1Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (406 aa)    
Predicted Functional Partners:
EYD77174.1
Altronate hydrolase.
 
 
 0.859
EYD78080.1
Galactonate dehydratase.
  
  
  0.785
EYD76400.1
Protein similar to mandelate racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.783
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.746
EYD75403.1
Gluconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
0.746
EYD74124.1
Dihydrodipicolinate synthase; Belongs to the DapA family.
    
 0.746
EYD76937.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.714
EYD71573.1
Muconolactone isomerase,putative; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
  0.711
EYD78081.1
Mandelate racemase/muconate lactonizing enzyme.
  
  
  0.627
EYD74899.1
Putative racemase.
  
  
0.603
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.