node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EYD73555.1 | EYD75129.1 | Rumeso_04676 | Rumeso_03225 | tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | 0.404 |
EYD74148.1 | EYD75129.1 | Rumeso_04205 | Rumeso_03225 | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | 0.435 |
EYD74148.1 | rlmN | Rumeso_04205 | Rumeso_03891 | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.676 |
EYD74148.1 | rph | Rumeso_04205 | Rumeso_04203 | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.869 |
EYD75129.1 | EYD73555.1 | Rumeso_03225 | Rumeso_04676 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.404 |
EYD75129.1 | EYD74148.1 | Rumeso_03225 | Rumeso_04205 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.435 |
EYD75129.1 | EYD75130.1 | Rumeso_03225 | Rumeso_03226 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | 0.989 |
EYD75129.1 | EYD75131.1 | Rumeso_03225 | Rumeso_03227 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | RNA signal recognition particle 4.5S ribosomal RNA. | 0.484 |
EYD75129.1 | EYD75723.1 | Rumeso_03225 | Rumeso_02810 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.439 |
EYD75129.1 | dapF | Rumeso_03225 | Rumeso_03224 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.859 |
EYD75129.1 | rlmN | Rumeso_03225 | Rumeso_03891 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.547 |
EYD75129.1 | rph | Rumeso_03225 | Rumeso_04203 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.670 |
EYD75130.1 | EYD75129.1 | Rumeso_03226 | Rumeso_03225 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | 0.989 |
EYD75130.1 | EYD75131.1 | Rumeso_03226 | Rumeso_03227 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | RNA signal recognition particle 4.5S ribosomal RNA. | 0.484 |
EYD75130.1 | dapF | Rumeso_03226 | Rumeso_03224 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.828 |
EYD75130.1 | rph | Rumeso_03226 | Rumeso_04203 | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.670 |
EYD75131.1 | EYD75129.1 | Rumeso_03227 | Rumeso_03225 | RNA signal recognition particle 4.5S ribosomal RNA. | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | 0.484 |
EYD75131.1 | EYD75130.1 | Rumeso_03227 | Rumeso_03226 | RNA signal recognition particle 4.5S ribosomal RNA. | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | 0.484 |
EYD75131.1 | dapF | Rumeso_03227 | Rumeso_03224 | RNA signal recognition particle 4.5S ribosomal RNA. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.484 |
EYD75723.1 | EYD75129.1 | Rumeso_02810 | Rumeso_03225 | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | MiaB family protein, possibly involved in tRNA or rRNA modification; Overlaps another CDS with the same product name. | 0.439 |