STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD74643.11,4-lactonase. (286 aa)    
Predicted Functional Partners:
EYD74645.1
2-dehydro-3-deoxygalactonokinase.
 
     0.941
EYD74644.1
2-dehydro-3-deoxyphosphogalactonate aldolase.
 
     0.921
EYD75762.1
L-arabonate dehydratase; Belongs to the IlvD/Edd family.
 
  
  0.783
EYD75405.1
Gluconolactonase.
  
     0.770
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
  0.746
ilvD-2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
  0.746
EYD75761.1
L-arabinose 1-dehydrogenase.
 
 
  0.562
EYD74646.1
Transmembrane transporter, major facilitator family.
       0.496
EYD74647.1
Transmembrane transporter, major facilitator family.
       0.496
EYD75273.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
     0.479
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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