STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EYD73962.1D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (310 aa)    
Predicted Functional Partners:
EYD78109.1
D-glycerate 2-kinase.
 
 0.789
EYD73964.1
Putative peptidase.
  
    0.789
EYD72117.1
D-3-phosphoglycerate dehydrogenase.
 
  
 
0.779
EYD73963.1
Membrane protein.
  
    0.776
EYD74432.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.750
EYD77884.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase.
 
 
  0.740
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 
 0.740
EYD75751.1
Phosphoglycolate phosphatase.
 
  
  0.740
EYD78103.1
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
    
 0.734
EYD77314.1
Glycolate dehydrogenase, FAD-binding protein subunit GlcE.
   
 0.734
Your Current Organism:
Rubellimicrobium mesophilum
NCBI taxonomy Id: 442562
Other names: R. mesophilum DSM 19309, Rubellimicrobium mesophilum DSM 19309, Rubellimicrobium sp. MSL-20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.