STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BLA_1069Putative membrane protein; COG3247: Uncharacterized conserved protein. (206 aa)    
Predicted Functional Partners:
BLA_0458
Peptidyl-prolyl cis-trans isomerase.
 
     0.604
crcB
Protein crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
 
     0.596
BLA_0004
Conserved hypothetical protein; COG5512: Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.579
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.538
lysX
lysyl-tRNA synthetase; COG2898: Uncharacterized conserved protein.
 
     0.504
BLA_1233
Conserved hypothetical protein.
  
    0.480
BLA_1068
COG3590: Predicted metalloendopeptidase.
       0.472
fas
Probable fatty acid synthase Fas; COG4982: 3-oxoacyl-acyl-carrier protein reductase.
  
     0.446
BLA_1125
COG0627: Predicted esterase.
  
     0.446
BLA_1509
HAD-superfamily hydrolase subfamily IIB; COG0561: Predicted hydrolases of the HAD superfamily.
  
     0.415
Your Current Organism:
Bifidobacterium animalis
NCBI taxonomy Id: 442563
Other names: B. animalis subsp. lactis AD011, Bifidobacterium animalis subsp. lactis AD011, Bifidobacterium animalis subsp. lactis str. AD011, Bifidobacterium animalis subsp. lactis strain AD011, Bifidobacterium lactis AD011
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