STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BLA_1282Peptidase M22, glycoprotease; COG1214: Inactive homolog of metal-dependent proteases, putative molecular chaperone. (280 aa)    
Predicted Functional Partners:
gcp
Metalloendopeptidase Gcp; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.999
BLA_1281
COG0802: Predicted ATPase or kinase.
  
 
 0.977
rimI
COG0456: Acetyltransferases.
  
 
 0.920
holA
COG1466: DNA polymerase III, delta subunit.
 
    0.766
BLA_1278
COG1555: DNA uptake protein and related DNA-binding proteins.
       0.646
BLA_1279
COG0658: Predicted membrane metal-binding protein.
       0.646
leuS
COG0495: Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.615
BLA_0298
Biotin acetyl-CoA-carboxylase synthetase; COG0340: Biotin-(acetyl-CoA carboxylase) ligase.
 
    0.509
BLA_1307
COG1573: Uracil-DNA glycosylase.
  
    0.481
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
  
 0.447
Your Current Organism:
Bifidobacterium animalis
NCBI taxonomy Id: 442563
Other names: B. animalis subsp. lactis AD011, Bifidobacterium animalis subsp. lactis AD011, Bifidobacterium animalis subsp. lactis str. AD011, Bifidobacterium animalis subsp. lactis strain AD011, Bifidobacterium lactis AD011
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