STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BLA_1303Putative membrane protein; COG0842: ABC-type multidrug transport system, permease component. (252 aa)    
Predicted Functional Partners:
BLA_1302
ABC transporter, ATP-binding protein; COG1131: ABC-type multidrug transport system, ATPase component.
 
  
 0.914
BLA_1301
Transcriptional regulator, TetR family protein; COG1309: Transcriptional regulator.
 
     0.761
BLA_0703
Possible NADPH-flavin oxidoreductase; COG0778: Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.507
hisF
Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
  
    0.500
rlmN
Radical SAM enzyme, Cfr family protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.467
cdsA
Probable phosphatidate cytidylyltransferase; COG0575: CDP-diglyceride synthetase.
  
    0.432
BLA_0238
COG1266: Predicted metal-dependent membrane protease.
  
  
 0.429
Your Current Organism:
Bifidobacterium animalis
NCBI taxonomy Id: 442563
Other names: B. animalis subsp. lactis AD011, Bifidobacterium animalis subsp. lactis AD011, Bifidobacterium animalis subsp. lactis str. AD011, Bifidobacterium animalis subsp. lactis strain AD011, Bifidobacterium lactis AD011
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