STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO72048.1Predicted dehydrogenase. (350 aa)    
Predicted Functional Partners:
SFO62224.1
Sugar phosphate isomerase/epimerase.
  
 
 0.854
SFO62250.1
Sugar phosphate isomerase/epimerase.
 
 
 0.831
SFP03492.1
Sugar phosphate isomerase/epimerase.
 
 0.804
SFO72029.1
Predicted dehydrogenase.
 
    
0.749
SFO72062.1
Uncharacterized lipoprotein YddW, UPF0748 family.
       0.705
SFO66494.1
Sugar phosphate isomerase/epimerase.
  
 
 0.671
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.670
SFO72044.1
Hypothetical protein.
       0.658
SFO86713.1
Aminotransferase, LLPSF_NHT_00031 family; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.632
SFP03466.1
Sugar phosphate isomerase/epimerase.
 
 
 0.627
Your Current Organism:
Halolactibacillus alkaliphilus
NCBI taxonomy Id: 442899
Other names: CGMCC AS 1.6843, H. alkaliphilus, Halolactibacillus alkaliphilus Cao et al. 2008, Halolactibacillus sp. H-5, NBRC 103919, strain H-5
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