STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO76105.1Amino acid ABC transporter ATP-binding protein, PAAT family. (256 aa)    
Predicted Functional Partners:
SFO76081.1
Amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-).
 0.998
SFO76095.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.998
SFO76069.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 0.994
SFO88401.1
Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-).
 0.978
yckA
Cystine transport system permease protein.
 0.975
SFP01974.1
Polar amino acid transport system permease protein.
 0.966
artP
Polar amino acid transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.919
SFO88379.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 0.908
yckB
Cystine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.901
yfiC
ATP-binding cassette, subfamily B.
 
     
0.892
Your Current Organism:
Halolactibacillus alkaliphilus
NCBI taxonomy Id: 442899
Other names: CGMCC AS 1.6843, H. alkaliphilus, Halolactibacillus alkaliphilus Cao et al. 2008, Halolactibacillus sp. H-5, NBRC 103919, strain H-5
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