STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP01379.1Peroxiredoxin. (199 aa)    
Predicted Functional Partners:
SFP01393.1
Cytochrome c-type biogenesis protein.
  
 0.994
SFP01406.1
Hypothetical protein.
       0.766
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.581
SFO99977.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
 
  
 0.561
SFP01422.1
Uncharacterized conserved protein, DUF302 family.
 
     0.545
ydfQ
Thioredoxin.
 
 
 
 0.541
cysK
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.511
msrA
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.502
SFP03065.1
Homoserine dehydrogenase.
    
  0.491
SFP01447.1
Rhodanese-related sulfurtransferase.
 
     0.483
Your Current Organism:
Halolactibacillus alkaliphilus
NCBI taxonomy Id: 442899
Other names: CGMCC AS 1.6843, H. alkaliphilus, Halolactibacillus alkaliphilus Cao et al. 2008, Halolactibacillus sp. H-5, NBRC 103919, strain H-5
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