STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_0085PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_0056 aminotransferase class I and II. (385 aa)    
Predicted Functional Partners:
GM18_2010
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gbm:Gbem_2218 Cys/Met metabolism pyridoxal-phosphate-dependent protein.
 
 
 0.953
GM18_2009
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gbm:Gbem_2219 Cys/Met metabolism pyridoxal-phosphate-dependent protein.
 
 
 0.951
GM18_2226
KEGG: gem:GM21_2237 cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.923
GM18_3740
PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: gbm:Gbem_0613 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
    
 0.923
GM18_0314
PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: gbm:Gbem_0277 homocysteine S-methyltransferase.
     
 0.922
GM18_3481
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: gem:GM21_3245 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
   
 0.919
GM18_2227
Cysteine synthase; KEGG: gbm:Gbem_1982 Cys/Met metabolism pyridoxal-phosphate-dependent protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
   
 0.918
GM18_3370
PFAM: aminotransferase class I and II; KEGG: gem:GM21_0961 aspartate aminotransferase.
 
  
0.915
metE
5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
    
 0.908
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
  0.900
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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