node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GM18_0300 | GM18_0302 | GM18_0300 | GM18_0302 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | KEGG: gem:GM21_2365 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. | 0.905 |
GM18_0300 | GM18_1162 | GM18_0300 | GM18_1162 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | 0.885 |
GM18_0300 | rpsB | GM18_0300 | GM18_2622 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | Ribosomal protein S2; KEGG: gem:GM21_1485 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.884 |
GM18_0300 | rpsC | GM18_0300 | GM18_0838 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.955 |
GM18_0300 | rpsD | GM18_0300 | GM18_0858 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.893 |
GM18_0300 | rpsG | GM18_0300 | GM18_0828 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.912 |
GM18_0300 | rpsL | GM18_0300 | GM18_0827 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.891 |
GM18_0300 | rpsO | GM18_0300 | GM18_1167 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.943 |
GM18_0300 | rpsQ | GM18_0300 | GM18_0841 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.945 |
GM18_0300 | rpsZ | GM18_0300 | GM18_0845 | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.892 |
GM18_0302 | GM18_0300 | GM18_0302 | GM18_0300 | KEGG: gem:GM21_2365 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | 0.905 |
GM18_1162 | GM18_0300 | GM18_1162 | GM18_0300 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | KEGG: gem:GM21_2363 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver. | 0.885 |
GM18_1162 | rpsB | GM18_1162 | GM18_2622 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | Ribosomal protein S2; KEGG: gem:GM21_1485 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
GM18_1162 | rpsC | GM18_1162 | GM18_0838 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
GM18_1162 | rpsD | GM18_1162 | GM18_0858 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
GM18_1162 | rpsG | GM18_1162 | GM18_0828 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
GM18_1162 | rpsL | GM18_1162 | GM18_0827 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
GM18_1162 | rpsO | GM18_1162 | GM18_1167 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.997 |
GM18_1162 | rpsQ | GM18_1162 | GM18_0841 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
GM18_1162 | rpsZ | GM18_1162 | GM18_0845 | PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.998 |